Issue
Gene cloning, expression pattern analysis, and subcellular localization of LIKE HETEROCHROMATIN PROTEIN 1 (LHP1) homologs in chrysanthemum (Chrysanthemum morifolium Ramat.)
Corresponding Author(s) : Zhiping Wu
Cellular and Molecular Biology,
Vol. 65 No. 3: Issue 3
Abstract
Flowering is a very important developmental stage in the plant life cycle. LIKE HETEROCHROMATIN PROTEIN 1 (LHP1) has been shown to participate in epigenetic silencing of flowering genes. Here, for the first time, we isolated and characterized six CmLHP1 homolog genes from the important day-neutral ornamental Chrysanthemum morifolium cultivar ‘Jin budiao'. These homolog genes were most likely generated by whole-genome duplication. Bioinformatic analysis showed that chrysanthemum LHP1 homologs present low similarity to other plant LHP1-like genes. However, three nuclear localization signals and two domains were highly conserved among them. The secondary structures of the CmLHP1 homologs mainly include α-helices and random coils, indicating that the proteins are mixed proteins. Phylogenetic tree analysis indicated that the six CmLHP1 genes constituted a small clade and had the closest relationship with LsLHP1 (Lactuca sativa LHP1). Quantitative RT-PCR analysis showed that the CmLHP1 homologs were expressed in different tissues during the developmental period of chrysanthemum, but they were highly expressed in the buds, especially during the key S1 stage of the inflorescence. Furthermore, the expression patterns of CmLHP1 homologs showed divergence under different photoperiods. Both CmLHP1b and CmLHP1e exhibited photoperiod sensitivity in leaves. Intriguingly, CmLHP1c was insensitive to photoperiod in both the shoot apexes and the leaves. Subcellular localization revealed that the six CmLHP1 proteins were located in the nucleus. These results reveal that CmLHP1 homolog genes could be strong candidates as important regulators of flowering time in chrysanthemum.
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- Suvija NV, Suresh J, Kumar RS, Kannan M. Evaluation of chrysanthemum (Chrysanthemum morifolium Ramat.) genotypes for loose flower, cut flower and pot mums. Int j innov res adv stud (IJIRAS) 2016; 3(4): 100-104.
- Anderson NO, Ascher PD. Selection of day-neutral, heat-delay-insensitive Dendranthema í— grandiflora genotypes. J Am Soc Hortic Sci 2001; 126: 710-721.
- Andrés F, Coupland G. The genetic basis of flowering responses to seasonal cues. Nat Rev Genet 2012; 13: 627-639.
- Tan FC, Swain SM. Genetics of flower initiation and development in annual and perennial plants. Physiol Plant 2006; 128: 8-17.
- Wilkie JD, Sedgley M, Olesen T. Regulation of floral initiation in horticultural trees. J Exp Bot 2008; 59: 3215-3228.
- Guo D, Li C, Dong R, Li X, Xiao X, Huang X. Molecular cloning and functional analysis of the FLOWERING LOCUS T (FT) homolog GhFT1 from Gossypium hirsutum. J Integr Plant Biol 2015; 57(6): 522-533.
- Niu L, Fu C, Lin H, Wolabu TW, Wu Y, Wang ZY. Control of floral transition in the bioenergy crop switchgrass. Plant Cell Environ 2016; 39: 2158-2171.
- Bemer M, Grossniklaus U. Dynamic regulation of Polycomb group activity during plant development. Curr Opin Plant Biol 2012; 15: 523-529.
- Molitor A, Shen WH. The Polycomb complex PRC1: composition and function in plants. J Genet Genomics 2013; 40: 231-238.
- Grossniklaus U, Paro R. Transcriptional silencing by polycomb group proteins. Cold Spring Harb Perspect Biol 2014; 6: a019331.
- Xiao J, Wagner D. Polycomb repression in the regulation of growth and development in Arabidopsis. Curr Opin Plant Biol 2015; 23: 15-24.
- Mozgova I, Hennig L. The polycomb group protein regulatory network. Annu Rev Plant Biol 2015; 66: 269-296.
- Larsson AS, Landberg K, Meeks-Wagner DR. The TERMINAL FLOWER2 (TFL2) gene controls the reproductive transition and meristem identity in Arabidopsis thaliana. Genetics 1998; 149: 597-605.
- Kotake T, Takada S, Nakahigashi K, Ohto M, Goto K. Arabidopsis TERMINAR FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWER LOCUS T to regulate flowering time and several floral homeotic genes. Plant Cell Physiol 2003; 44: 555-564.
- Gaudin V, Libault M, Pouteau S, Juul T, Zhao G, Lefebvre D, et al. Mutations in LIKE HETEROCHROMATIN PROTEIN 1 affect flowering time and plant architecture in Arabidopsis. Development 2001; 128: 4847-4858.
- Derkacheva M, Steinbach Y, Wildhaber T, Mozgova I, Mahrez W, Nanni P, et al. Arabidopsis MSI1 connects LHP1 to PRC2 complexes. EMBO J 2013; 32: 2073-2085.
- Wang H, Liu C, Cheng J, Liu J, Zhang L, He C, et al. Arabidopsis flower and embryo developmental genes are repressed in seedlings by different combinations of polycomb group proteins in association with distinct sets of Cis-regulatory elements. PLoS Genet 2016; 12(1): e1005771.
- Kim JH, Durrett TP, Last RL, Jander G. Characterization of the Arabidopsis TU8 glucosinolate mutation, an allele of TERMINAR FLOWER 2. Plant Mol Biol 2004; 54: 671-682.
- Cui H, Benfey PN. Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root. Plant J 2009; 58: 1016-1027.
- Takada S, Goto K. Terminal flower 2, an Arabidopsis homolog of heterochromatin protein 1, counteracts the activation of flowering locus T by constans in the vascular tissues of leaves to regulate flowering time. Plant Cell 2003; 15: 2856-2865.
- Germann S, Juul-Jensen T, Letarnec B, Gaudin V. DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci. Plant J 2006; 48: 153-163.
- Nakahigashi K, Jasencakova Z, Schubert I, Goto K. The Arabidopsis heterochromatin protein1 homolog (TERMINAL FLOWER2) silences genes within the euchromatic region but not genes positioned in heterochromatin. Plant Cell Physiol 2005; 46: 1747-1756.
- Feng J, Lu J. LHP1 Could Act as an Activator and a Repressor of Transcription in Plants. Front Plant Sci 2017; 8: 2041.
- Exner V, Aichinger E, Shu H, Wildhaber T, Alfarano P, Caflisch A, et al. The chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 is essential for H3K27me3 binding and function during Arabidopsis development. PLoS One 2009; 4(4): e5335.
- Mimida N, Kidou S, Kotoda N. Constitutive expression of two apple (Malusí— domestica Borkh.) homolog genes of LIKE HETEROCHROMATIN PROTEIN 1 affects flowering time and whole-plant growth in transgenic Arabidopsis. Mol Genet Genom 2007; 278: 295-305.
- Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007; 23: 2947-2948.
- Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 2011; 28(10): 2731-2739.
- Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4: 406-425.
- Helariutta Y, Elomaa P, Kotilainen M, Seppanen P, Teeri TH. Cloning of cDNA coding for dihydroflavonol-4-reductase (DFR) and characterization of dfr expression in the corollas of Gerbera hybrida var. Regina (Compositae). Plant Mol Biol 1993; 22 (2): 183-193.
- Schmittgen TD, Livak KJ. Analyzing real-time PCR data by the comparative CT method. Nat Protoc 2008; 3(6): 1101-1108.
- Huang D, Li X, Sun M, Zhang T, Pan H, Cheng T, et al. Identification and Characterization of CYC-Like Genes in Regulation of Ray Floret Development in Chrysanthemum morifolium. Front Plant Sci 2016; 7: 1633.
- Zemach A, Li Y, Ben-Meir H, Oliva M, Mosquna A, Kiss V, et al. Different domains control the localization and mobility of LIKE HETEROCHROMATIN PROTEIN 1 in Arabidopsis nuclei. Plant Cell 2006; 18: 133-145.
- Latrasse D, Germann S, Houba-He´rin N, Dubois E, Bui-Prodhomme D. Control of Flowering and Cell Fate by LIF2, an RNA Binding Partner of the Polycomb Complex Component LHP1. PLoS One 2011; 6(1): e16592.
- Lomberk G, Wallrath L, Urrutia R. The heterochromatin protein 1 family. Genome Biol 2006; 7(7): 228.
- Guan H, Zheng Z, Grey PH, Li Y, Oppenheimer DG. Conservation and divergence of plant LHP1 protein sequences and expression patterns in angiosperms and gymnosperms. Mol Genet Genom 2011; 285: 357-373.
- Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE. Ancestral polyploidy in seed plants and angiosperms. Nature 2011; 473: 97-100.
- Adams KL, Wendel JF. Polyploidy and genome evolution in plants. Curr Opin Plant Biol 2005; 8: 135-141.
- Jacquemin J, Laudie M, Cooke R. A recent duplication revisited: phylogenetic analysis reveals an ancestral duplication highly-conserved throughout the Oryza genus and beyond. BMC Plant Biol 2009; 9: 146.
- Tahtiharju S, Rijpkema AS, Vetterli A, Albert VA, Teeri TH, Elomaa P. Evolution and diversification of the CYC/TB1 gene family in Asteraceae–a comparative study in Gerbera (Mutisieae) and sunflower (Heliantheae). Mol Biol Evol 2012; 29: 1155-1166.
- Garcíªs HMP, Spencer VMR, Kim M. Control of floret symmetry by RAY3, SvDIV1B and SvRAD in the capitulum of Senecio vulgaris. Plant Physiol 2016; 171: 2055-2068.
References
Suvija NV, Suresh J, Kumar RS, Kannan M. Evaluation of chrysanthemum (Chrysanthemum morifolium Ramat.) genotypes for loose flower, cut flower and pot mums. Int j innov res adv stud (IJIRAS) 2016; 3(4): 100-104.
Anderson NO, Ascher PD. Selection of day-neutral, heat-delay-insensitive Dendranthema í— grandiflora genotypes. J Am Soc Hortic Sci 2001; 126: 710-721.
Andrés F, Coupland G. The genetic basis of flowering responses to seasonal cues. Nat Rev Genet 2012; 13: 627-639.
Tan FC, Swain SM. Genetics of flower initiation and development in annual and perennial plants. Physiol Plant 2006; 128: 8-17.
Wilkie JD, Sedgley M, Olesen T. Regulation of floral initiation in horticultural trees. J Exp Bot 2008; 59: 3215-3228.
Guo D, Li C, Dong R, Li X, Xiao X, Huang X. Molecular cloning and functional analysis of the FLOWERING LOCUS T (FT) homolog GhFT1 from Gossypium hirsutum. J Integr Plant Biol 2015; 57(6): 522-533.
Niu L, Fu C, Lin H, Wolabu TW, Wu Y, Wang ZY. Control of floral transition in the bioenergy crop switchgrass. Plant Cell Environ 2016; 39: 2158-2171.
Bemer M, Grossniklaus U. Dynamic regulation of Polycomb group activity during plant development. Curr Opin Plant Biol 2012; 15: 523-529.
Molitor A, Shen WH. The Polycomb complex PRC1: composition and function in plants. J Genet Genomics 2013; 40: 231-238.
Grossniklaus U, Paro R. Transcriptional silencing by polycomb group proteins. Cold Spring Harb Perspect Biol 2014; 6: a019331.
Xiao J, Wagner D. Polycomb repression in the regulation of growth and development in Arabidopsis. Curr Opin Plant Biol 2015; 23: 15-24.
Mozgova I, Hennig L. The polycomb group protein regulatory network. Annu Rev Plant Biol 2015; 66: 269-296.
Larsson AS, Landberg K, Meeks-Wagner DR. The TERMINAL FLOWER2 (TFL2) gene controls the reproductive transition and meristem identity in Arabidopsis thaliana. Genetics 1998; 149: 597-605.
Kotake T, Takada S, Nakahigashi K, Ohto M, Goto K. Arabidopsis TERMINAR FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWER LOCUS T to regulate flowering time and several floral homeotic genes. Plant Cell Physiol 2003; 44: 555-564.
Gaudin V, Libault M, Pouteau S, Juul T, Zhao G, Lefebvre D, et al. Mutations in LIKE HETEROCHROMATIN PROTEIN 1 affect flowering time and plant architecture in Arabidopsis. Development 2001; 128: 4847-4858.
Derkacheva M, Steinbach Y, Wildhaber T, Mozgova I, Mahrez W, Nanni P, et al. Arabidopsis MSI1 connects LHP1 to PRC2 complexes. EMBO J 2013; 32: 2073-2085.
Wang H, Liu C, Cheng J, Liu J, Zhang L, He C, et al. Arabidopsis flower and embryo developmental genes are repressed in seedlings by different combinations of polycomb group proteins in association with distinct sets of Cis-regulatory elements. PLoS Genet 2016; 12(1): e1005771.
Kim JH, Durrett TP, Last RL, Jander G. Characterization of the Arabidopsis TU8 glucosinolate mutation, an allele of TERMINAR FLOWER 2. Plant Mol Biol 2004; 54: 671-682.
Cui H, Benfey PN. Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root. Plant J 2009; 58: 1016-1027.
Takada S, Goto K. Terminal flower 2, an Arabidopsis homolog of heterochromatin protein 1, counteracts the activation of flowering locus T by constans in the vascular tissues of leaves to regulate flowering time. Plant Cell 2003; 15: 2856-2865.
Germann S, Juul-Jensen T, Letarnec B, Gaudin V. DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci. Plant J 2006; 48: 153-163.
Nakahigashi K, Jasencakova Z, Schubert I, Goto K. The Arabidopsis heterochromatin protein1 homolog (TERMINAL FLOWER2) silences genes within the euchromatic region but not genes positioned in heterochromatin. Plant Cell Physiol 2005; 46: 1747-1756.
Feng J, Lu J. LHP1 Could Act as an Activator and a Repressor of Transcription in Plants. Front Plant Sci 2017; 8: 2041.
Exner V, Aichinger E, Shu H, Wildhaber T, Alfarano P, Caflisch A, et al. The chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 is essential for H3K27me3 binding and function during Arabidopsis development. PLoS One 2009; 4(4): e5335.
Mimida N, Kidou S, Kotoda N. Constitutive expression of two apple (Malusí— domestica Borkh.) homolog genes of LIKE HETEROCHROMATIN PROTEIN 1 affects flowering time and whole-plant growth in transgenic Arabidopsis. Mol Genet Genom 2007; 278: 295-305.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007; 23: 2947-2948.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 2011; 28(10): 2731-2739.
Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4: 406-425.
Helariutta Y, Elomaa P, Kotilainen M, Seppanen P, Teeri TH. Cloning of cDNA coding for dihydroflavonol-4-reductase (DFR) and characterization of dfr expression in the corollas of Gerbera hybrida var. Regina (Compositae). Plant Mol Biol 1993; 22 (2): 183-193.
Schmittgen TD, Livak KJ. Analyzing real-time PCR data by the comparative CT method. Nat Protoc 2008; 3(6): 1101-1108.
Huang D, Li X, Sun M, Zhang T, Pan H, Cheng T, et al. Identification and Characterization of CYC-Like Genes in Regulation of Ray Floret Development in Chrysanthemum morifolium. Front Plant Sci 2016; 7: 1633.
Zemach A, Li Y, Ben-Meir H, Oliva M, Mosquna A, Kiss V, et al. Different domains control the localization and mobility of LIKE HETEROCHROMATIN PROTEIN 1 in Arabidopsis nuclei. Plant Cell 2006; 18: 133-145.
Latrasse D, Germann S, Houba-He´rin N, Dubois E, Bui-Prodhomme D. Control of Flowering and Cell Fate by LIF2, an RNA Binding Partner of the Polycomb Complex Component LHP1. PLoS One 2011; 6(1): e16592.
Lomberk G, Wallrath L, Urrutia R. The heterochromatin protein 1 family. Genome Biol 2006; 7(7): 228.
Guan H, Zheng Z, Grey PH, Li Y, Oppenheimer DG. Conservation and divergence of plant LHP1 protein sequences and expression patterns in angiosperms and gymnosperms. Mol Genet Genom 2011; 285: 357-373.
Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE. Ancestral polyploidy in seed plants and angiosperms. Nature 2011; 473: 97-100.
Adams KL, Wendel JF. Polyploidy and genome evolution in plants. Curr Opin Plant Biol 2005; 8: 135-141.
Jacquemin J, Laudie M, Cooke R. A recent duplication revisited: phylogenetic analysis reveals an ancestral duplication highly-conserved throughout the Oryza genus and beyond. BMC Plant Biol 2009; 9: 146.
Tahtiharju S, Rijpkema AS, Vetterli A, Albert VA, Teeri TH, Elomaa P. Evolution and diversification of the CYC/TB1 gene family in Asteraceae–a comparative study in Gerbera (Mutisieae) and sunflower (Heliantheae). Mol Biol Evol 2012; 29: 1155-1166.
Garcíªs HMP, Spencer VMR, Kim M. Control of floret symmetry by RAY3, SvDIV1B and SvRAD in the capitulum of Senecio vulgaris. Plant Physiol 2016; 171: 2055-2068.