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CRISPR/Cas9; A robust technology for producing genetically engineered plants
Corresponding Author(s) : Khadim Hussain
Cellular and Molecular Biology,
Vol. 64 No. 14: Issue 14
Abstract
Keywords
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- M. Endo, M. Mikami and S. Toki Biallelic gene targeting in rice Plant physiology 170 (2016) 667-677.
- T. Cermak, E. L. Doyle, M. Christian, L. Wang, Y. Zhang, C. Schmidt, J. A. Baller, N. V. Somia, A. J. Bogdanove and D. F. Voytas Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting Nucleic Acids Res 39 e82.
- S. Svitashev, J. Young, C. Schwartz, H. Gao, S. C. Falco and A. M. Cigan Targeted mutagenesis, precise gene editing and site-specific gene insertion in maize using Cas9 and guide RNA Plant physiology (2015) pp. 00793.02015.
- Z. Li, Z.-B. Liu, A. Xing, B. P. Moon, J. P. Koellhoffer, L. Huang, R. T. Ward, E. Clifton, S. C. Falco and A. M. Cigan Cas9-guide RNA directed genome editing in soybean Plant physiology 169 (2015) 960-970.
- R. R. Beerli, B. Dreier and C. F. Barbas Positive and negative regulation of endogenous genes by designed transcription factors Proceedings of the National Academy of Sciences 97 (2000) 1495-1500.
- B. Chen, L. A. Gilbert, B. A. Cimini, J. Schnitzbauer, W. Zhang, G. W. Li, J. Park, E. H. Blackburn, J. S. Weissman, L. S. Qi and B. Huang Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system Cell 155 (2013) 1479-1491.
- M. Luo, B. Gilbert and M. Ayliffe Applications of CRISPR/Cas9 technology for targeted mutagenesis, gene replacement and stacking of genes in higher plants Plant cell reports 35 (2016) 1439-1450.
- T. O. Auer, K. Duroure, A. De Cian, J.-P. Concordet and F. Del Bene Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair Genome Research 24 (2014) 142-153.
- J. Steinert, S. Schiml and H. Puchta Homology-based double-strand break-induced genome engineering in plants Plant cell reports 35 (2016) 1429-1438.
- F. J. Mojica, J. García-Martínez and E. Soria Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements Journal of molecular evolution 60 (2005) 174-182.
- T. Ishii and M. Araki Consumer acceptance of food crops developed by genome editing Plant cell reports 35 (2016) 1507-1518.
- S. Peng, J. P. York and P. Zhang A transgenic approach for RNA interference-based genetic screening in mice Proceedings of the National Academy of Sciences of the United States of America 103 (2006) 2252-2256.
- L. Pena Transgenic plants: Methods and protocols, Springer Science & Business Media, 2005.
- D. P. Weeks, M. H. Spalding and B. Yang Use of designer nucleases for targeted gene and genome editing in plants Plant Biotechnology Journal 14 (2016) 483-495.
- E. Southgate, M. Davey, J. Power and R. Marchant Factors affecting the genetic engineering of plants by microprojectile bombardment Biotechnology advances 13 (1995) 631-651.
- N. G. Bologna and O. Voinnet The diversity, biogenesis, and activities of endogenous silencing small RNAs in Arabidopsis Annual review of plant biology 65 (2014) 473-503.
- D. C. Baulcombe VIGS, HIGS and FIGS: small RNA silencing in the interactions of viruses or filamentous organisms with their plant hosts Current opinion in plant biology 26 (2015) 141-146.
- M. Sticklen Plant genetic engineering to improve biomass characteristics for biofuels Current opinion in biotechnology 17 (2006) 315-319.
- Z. Zhang, Y. Mao, S. Ha, W. Liu, J. R. Botella and J.-K. Zhu A multiplex CRISPR/Cas9 platform for fast and efficient editing of multiple genes in Arabidopsis Plant Cell Reports 35 (2016) 1519-1533.
- N. Agrawal, P. V. Dasaradhi, A. Mohmmed, P. Malhotra, R. K. Bhatnagar and S. K. Mukherjee RNA interference: biology, mechanism, and applications Microbiol Mol Biol Rev 67 (2003) 657-685.
- K. T. Love, K. P. Mahon, C. G. Levins, K. A. Whitehead, W. Querbes, J. R. Dorkin, J. Qin, W. Cantley, L. L. Qin and T. Racie Lipid-like materials for low-dose, in vivo gene silencing Proceedings of the National Academy of Sciences 107 (2010) 1864-1869.
- E. Breese and M. Hayward The genetic basis of present breeding methods in forage crops Euphytica 21 (1972) 324-336.
- M. Adem APPLICATION OF PRECISE GENOME EDITING IN PLANTS SDRP Journal of Plant Science 2 (2017) 1-9.
- J. R. Latham, A. K. Wilson and R. A. Steinbrecher The mutational consequences of plant transformation BioMed Research International 2006 (2006) 1-7.
- M. Antoniou, C. Robinson and J. Fagan GMO myths and truths Earth Open Source 47 (2012).
- J. Van der Oost, M. M. Jore, E. R. Westra, M. Lundgren and S. J. Brouns CRISPR-based adaptive and heritable immunity in prokaryotes Trends in biochemical sciences 34 (2009) 401-407.
- S. Eyre, J. Bowes, D. e. Diogo, A. Lee, A. Barton, P. Martin, A. Zhernakova, E. Stahl, S. Viatte and K. McAllister High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis Nature genetics 44 (2012) 1336.
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- M. Jinek, K. Chylinski, I. Fonfara, M. Hauer, J. A. Doudna and E. Charpentier A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity science 337 (2012) 816-821.
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References
M. Endo, M. Mikami and S. Toki Biallelic gene targeting in rice Plant physiology 170 (2016) 667-677.
T. Cermak, E. L. Doyle, M. Christian, L. Wang, Y. Zhang, C. Schmidt, J. A. Baller, N. V. Somia, A. J. Bogdanove and D. F. Voytas Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting Nucleic Acids Res 39 e82.
S. Svitashev, J. Young, C. Schwartz, H. Gao, S. C. Falco and A. M. Cigan Targeted mutagenesis, precise gene editing and site-specific gene insertion in maize using Cas9 and guide RNA Plant physiology (2015) pp. 00793.02015.
Z. Li, Z.-B. Liu, A. Xing, B. P. Moon, J. P. Koellhoffer, L. Huang, R. T. Ward, E. Clifton, S. C. Falco and A. M. Cigan Cas9-guide RNA directed genome editing in soybean Plant physiology 169 (2015) 960-970.
R. R. Beerli, B. Dreier and C. F. Barbas Positive and negative regulation of endogenous genes by designed transcription factors Proceedings of the National Academy of Sciences 97 (2000) 1495-1500.
B. Chen, L. A. Gilbert, B. A. Cimini, J. Schnitzbauer, W. Zhang, G. W. Li, J. Park, E. H. Blackburn, J. S. Weissman, L. S. Qi and B. Huang Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system Cell 155 (2013) 1479-1491.
M. Luo, B. Gilbert and M. Ayliffe Applications of CRISPR/Cas9 technology for targeted mutagenesis, gene replacement and stacking of genes in higher plants Plant cell reports 35 (2016) 1439-1450.
T. O. Auer, K. Duroure, A. De Cian, J.-P. Concordet and F. Del Bene Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair Genome Research 24 (2014) 142-153.
J. Steinert, S. Schiml and H. Puchta Homology-based double-strand break-induced genome engineering in plants Plant cell reports 35 (2016) 1429-1438.
F. J. Mojica, J. García-Martínez and E. Soria Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements Journal of molecular evolution 60 (2005) 174-182.
T. Ishii and M. Araki Consumer acceptance of food crops developed by genome editing Plant cell reports 35 (2016) 1507-1518.
S. Peng, J. P. York and P. Zhang A transgenic approach for RNA interference-based genetic screening in mice Proceedings of the National Academy of Sciences of the United States of America 103 (2006) 2252-2256.
L. Pena Transgenic plants: Methods and protocols, Springer Science & Business Media, 2005.
D. P. Weeks, M. H. Spalding and B. Yang Use of designer nucleases for targeted gene and genome editing in plants Plant Biotechnology Journal 14 (2016) 483-495.
E. Southgate, M. Davey, J. Power and R. Marchant Factors affecting the genetic engineering of plants by microprojectile bombardment Biotechnology advances 13 (1995) 631-651.
N. G. Bologna and O. Voinnet The diversity, biogenesis, and activities of endogenous silencing small RNAs in Arabidopsis Annual review of plant biology 65 (2014) 473-503.
D. C. Baulcombe VIGS, HIGS and FIGS: small RNA silencing in the interactions of viruses or filamentous organisms with their plant hosts Current opinion in plant biology 26 (2015) 141-146.
M. Sticklen Plant genetic engineering to improve biomass characteristics for biofuels Current opinion in biotechnology 17 (2006) 315-319.
Z. Zhang, Y. Mao, S. Ha, W. Liu, J. R. Botella and J.-K. Zhu A multiplex CRISPR/Cas9 platform for fast and efficient editing of multiple genes in Arabidopsis Plant Cell Reports 35 (2016) 1519-1533.
N. Agrawal, P. V. Dasaradhi, A. Mohmmed, P. Malhotra, R. K. Bhatnagar and S. K. Mukherjee RNA interference: biology, mechanism, and applications Microbiol Mol Biol Rev 67 (2003) 657-685.
K. T. Love, K. P. Mahon, C. G. Levins, K. A. Whitehead, W. Querbes, J. R. Dorkin, J. Qin, W. Cantley, L. L. Qin and T. Racie Lipid-like materials for low-dose, in vivo gene silencing Proceedings of the National Academy of Sciences 107 (2010) 1864-1869.
E. Breese and M. Hayward The genetic basis of present breeding methods in forage crops Euphytica 21 (1972) 324-336.
M. Adem APPLICATION OF PRECISE GENOME EDITING IN PLANTS SDRP Journal of Plant Science 2 (2017) 1-9.
J. R. Latham, A. K. Wilson and R. A. Steinbrecher The mutational consequences of plant transformation BioMed Research International 2006 (2006) 1-7.
M. Antoniou, C. Robinson and J. Fagan GMO myths and truths Earth Open Source 47 (2012).
J. Van der Oost, M. M. Jore, E. R. Westra, M. Lundgren and S. J. Brouns CRISPR-based adaptive and heritable immunity in prokaryotes Trends in biochemical sciences 34 (2009) 401-407.
S. Eyre, J. Bowes, D. e. Diogo, A. Lee, A. Barton, P. Martin, A. Zhernakova, E. Stahl, S. Viatte and K. McAllister High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis Nature genetics 44 (2012) 1336.
I. Grissa, G. Vergnaud and C. Pourcel CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats Nucleic acids research 35 (2007) W52-W57.
W. D. Travis, T. E. King, E. D. Bateman, D. A. Lynch, F. d. Capron, D. Center, T. V. Colby, J. F. o. Cordier, R. M. DuBois and J. Galvin American Thoracic Society/European Respiratory Society international multidisciplinary consensus classification of the idiopathic interstitial pneumonias American Journal of Respiratory and Critical Care Medicine 165 (2002) 277-304.
E. Deltcheva, K. Chylinski, C. M. Sharma, K. Gonzales, Y. Chao, Z. A. Pirzada, M. R. Eckert, J. r. Vogel and E. Charpentier CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III Nature 471 (2011) 602.
M. Jinek, K. Chylinski, I. Fonfara, M. Hauer, J. A. Doudna and E. Charpentier A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity science 337 (2012) 816-821.
J. E. Garneau, M. E. Dupuis, M. Villion, D. A. Romero, R. Barrangou, P. Boyaval, C. Fremaux, P. Horvath, A. H. Magadan and S. Moineau The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA Nature 468 (2010) 67-71.
M. Szczepek, V. Brondani, J. Büchel, L. Serrano, D. J. Segal and T. Cathomen Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases Nature biotechnology 25 (2007) 786.
N. P. Pavletich and C. O. Pabo Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A Science 252 (1991) 809-817.
H. A. Greisman and C. O. Pabo A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites Science 275 (1997) 657-661.
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