Issue
Genetic variation of yellow pistachio hard scale, Lepidosaphes pistaciae Archangelskaya (Hem.: Diaspididae) populations in Kerman province, Iran revealed by ISSR markers
Corresponding Author(s) : Hassan Ali Vahedi
Cellular and Molecular Biology,
Vol. 64 No. 11: Issue 11
Abstract
Yellow pistachio hard scale, Lepidosaphes pistaciae (Hem.: Coccoidea: Diaspididae) is one of the detrimental pests to pistachio trees. This pest is distributed throughout the pistachio producing regions of Iran. It is complex species, having distinct genetic variation. As genetically diversity awareness is essential for identification and management, the diaspidid samples selected from 10 infected region and used to test hypotheses about the genetic variability between and within its populations, during 2016. Inter simple sequence repeat (ISSR) molecular marker was used to assess genetic diversity. Extracted DNA of specimens amplified with nine ISSR primers, six of primers showed the best polymorphism. After observation and scoring bands patterns, data were analyzed with NTSYS ver. 2.02 and POPGENE ver. 1.31 software. Results showed that the bands are in the range between 100 and 2000 bp. The used ISSR primers generated 63 polymorphic fragments, and the average heterozygosity for each primer was 0.266 and the maximum number of bands were recorded for primer SMR7. A dendrogram based on the Unweighted Pair Group Method with Arithmetic mean (UPGMA) method placed them in three groups also, Anar and Baft populations were the most difference among populations. The dendrogram includes the group A (comprise populations collected from Baft, Bardsir, Zarand, Sirjan and Shahrbabak), group B (including populations collected from north Kerman, south Kerman, Kabootarkhan, and Rafsanjan) and group C (including populations collected from Anar). The results showed that ISSR markers technique is able to detect the genetic diversity among the yellow pistachio hard scale populations of various commercial pistachio cultivars within the pistachio orchards, in Kerman, Iran.
Keywords
Download Citation
Endnote/Zotero/Mendeley (RIS)BibTeX
- Samih MA, Alizadeh A, Saberi Riseh R. Pistachio pests and diseases in Iran and their IPM: Organization of Jihad-e-University, Tehran; 2005.
- Danzig E. Fauna of Russia and neighbouring countries. Rhynchota, Volume X: suborder scale insects (Coccinea): families Phoenicococcidae and Diaspididae: Nauka, S.-Peterburgskoe Otdelenie; 1993.
- Seghatoleslami H. List of scale insects (Fam. Diaspididae) of Iran. J Entomol Soc Ir. 1977; 4(1/2): 5-19.
- Watson GW, Ulenberg SA. A pictorial key to important Diaspididae (Hemiptera: Coccoidea) of the world. Boll Zool Agrar Bachic. 2002; 2(33): 1-178.
- Vijayan K, Anuradha H, Nair C et al. Genetic diversity and differentiation among populations of the Indian eri silkworm, Samia cynthia ricini, revealed by ISSR markers. J Insect Sci. 2006; 6(1): 1-11.
- Xie J-N, Guo J-J, Jin D-C, Wang X-J. Genetic Diversity of Sogatella furcifera (Hemiptera: Delphacidae) in China Detected by Inter-Simple Sequence Repeats. J Insect Sci. 2014; 14(1): 1-6.
- Zietkiewicz E, Rafalski A, Labuda D. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics. 1994; 20(2): 176-183.
- Shouhani H, Dousti A, Radjabi R, Zarei M. Application of ISSR to study the genetic diversity of honeybee (Apis mellifera L.) populations in some areas of Iran. J Biosci Biotechnol. 2014; 3(2): 127-131.
- Hundsdoerfer AK, Kitching IJ, Wink M. The phylogeny of the Hyles euphorbiae complex (Lepidoptera: Sphingidae): molecular evidence from sequence data and ISSR-PCR fingerprints. Org Divers Evol. 2005; 5(3): 173-198.
- Luque C, Legal L, Staudter H, Gers C, Wink M. ISSR (inter simple sequence repeats) as genetic markers in Noctuids (Lepidoptera). Hereditas. 2002; 136(3): 251-253.
- Radjabi R, Sarafrazi A, Tarang A, Kamali K, Tirgari S. Intraspecific biodiversity of iranian local races of silkworm Bombyx mori by ISSR (inter-simple sequence repeat) molecular marker. World J Zool. 2012; 7(1): 17-22.
- Hosseininaveh F, Nozari J, Kaydan MB, Hosseininaveh V. Molecular and morphological identification of pistachio armored scale insects (Hemiptera: Diaspididae), with description of a new species. Zootaxa. 2016; 4200(4): 523-543.
- Saha D, Ranjan SK, Mallick CB, Vidyarthi AS, Ramani R. Genetic diversity in lac resin-secreting insects belonging to Kerria spp., as revealed through ISSR markers. Biochem Syst Ecol. 2011; 39(2): 112-120.
- Downie D, Gullan P. Phylogenetic analysis of mealybugs (Hemiptera: Coccoidea: Pseudococcidae) based on DNA sequences from three nuclear genes, and a review of the higher classification. Syst Entomol. 2004; 29(2): 238-260.
- Hardy NB, Gullan PJ, Hodgson CJ. A subfamily"level classification of mealybugs (Hemiptera: Pseudococcidae) based on integrated molecular and morphological data. Syst Entomol. 2008; 33(1): 51-71.
- Hodgson CJ, Henderson RC. Coccidae (Insecta: Hemiptera: Coccoidea). Fauna N Z. 2000; 41: 1-264.
- Chen H, He R, Wang Z et al. Genetic diversity and variability in populations of the white wax insect Ericerus pela, assessed by AFLP analysis. Genet Mol Res. 2015; 14(4): 17820-17827.
- Chen S-Y, Dai T-X, Chang Y-T et al. Genetic diversity among'Ocimum'species based on ISSR, RAPD and SRAP markers. Aust J Crop Sci. 2013; 7(10): 1463.
- Rohlf F. NTSYS-pc Numerical taxonomy and multivariate analysis system. version 2.02 e. EXETER Software Setauket. New York. 1998.
- Yeh F, Yang R, Boyle T, Ye Z, Mao J. POPGENE, the user-friendly shareware for population genetic analysis. Alberta, Canada: Molecular Biology and Biotechnology Centre, University of Alberta. 1997.
- García Morales M, Denno BD, Miller DR, Miller GL, Ben-Dov Y, Hardy NB. ScaleNet: a literature-based model of scale insect biology and systematics. Database. 2016.
- Hess J, Kadereit J, Vargas P. The colonization history of Olea europaea L. in Macaronesia based on internal transcribed spacer 1 (ITS"1) sequences, randomly amplified polymorphic DNAs (RAPD), and intersimple sequence repeats (ISSR). Mol Ecol. 2000; 9(7): 857-868.
- Liu J-N, Gui F-R, Li Z-Y. Genetic diversity of the planthopper, Sogatella furcifera in the Greater Mekong Subregion detected by inter-simple sequence repeats (ISSR) markers. J Insect Sci. 2010; 10(1): 1-14.
- Dušinskí½ R, Kúdela M, Stloukalová V, Jedlićka L. Use of inter-simple sequence repeat (ISSR) markers for discrimination between and within species of blackflies (Diptera: Simuliidae). Biologia. 2006; 61(3): 299-304.
- Ceksteryte V, Paplauskiene V, Tamasauskiene D, Pasakinskiene I, Mazeikiene I. Genetic characterization of Lithuanian honeybee lines based on ISSR polymorphism. Apidologie. 2012; 43(6): 652-662.
- Amouroux P, Crochard D, Germain J-F et al. Genetic diversity of armored scales (Hemiptera: Diaspididae) and soft scales (Hemiptera: Coccidae) in Chile. Sci Rep. 2017; 7: 1-12.
- de león JH, Jones WA. Detection of DNA polymorphisms in Homalodisca coagulata (Homoptera: Cicadellidae) by polymerase chain reaction-based DNA fingerprinting methods. Ann Entomol Soc Am. 2004; 97(3): 574-585.
- Meena RL, Ramasubramanian T, Venkatesan S, Mohankumar S. Molecular characterization of Tospovirus transmitting thrips populations from India. Am J Biochem Biotechnol. 2005; 1(3): 1-3.
- Phillips C, Cane R, Mee J, Chapman H, Hoelmer K, Coutinot D. Intraspecific variation in the ability of Microctonus aethiopoides (Hymenoptera: Braconidae) to parasitise Sitona lepidus (Coleoptera: Curculionidae). N Z J Agric Res. 2002; 45(4): 295-303.
- Rahimi A, Mirmoayedi A, Kahrizi D, Zarei L, Jamali S. Genetic diversity of Iranian honey bee (Apis mellifera meda Skorikow, 1829) populations based on ISSR markers. Cell Mol Biol. 2016; 62(4): 53-58.
References
Samih MA, Alizadeh A, Saberi Riseh R. Pistachio pests and diseases in Iran and their IPM: Organization of Jihad-e-University, Tehran; 2005.
Danzig E. Fauna of Russia and neighbouring countries. Rhynchota, Volume X: suborder scale insects (Coccinea): families Phoenicococcidae and Diaspididae: Nauka, S.-Peterburgskoe Otdelenie; 1993.
Seghatoleslami H. List of scale insects (Fam. Diaspididae) of Iran. J Entomol Soc Ir. 1977; 4(1/2): 5-19.
Watson GW, Ulenberg SA. A pictorial key to important Diaspididae (Hemiptera: Coccoidea) of the world. Boll Zool Agrar Bachic. 2002; 2(33): 1-178.
Vijayan K, Anuradha H, Nair C et al. Genetic diversity and differentiation among populations of the Indian eri silkworm, Samia cynthia ricini, revealed by ISSR markers. J Insect Sci. 2006; 6(1): 1-11.
Xie J-N, Guo J-J, Jin D-C, Wang X-J. Genetic Diversity of Sogatella furcifera (Hemiptera: Delphacidae) in China Detected by Inter-Simple Sequence Repeats. J Insect Sci. 2014; 14(1): 1-6.
Zietkiewicz E, Rafalski A, Labuda D. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics. 1994; 20(2): 176-183.
Shouhani H, Dousti A, Radjabi R, Zarei M. Application of ISSR to study the genetic diversity of honeybee (Apis mellifera L.) populations in some areas of Iran. J Biosci Biotechnol. 2014; 3(2): 127-131.
Hundsdoerfer AK, Kitching IJ, Wink M. The phylogeny of the Hyles euphorbiae complex (Lepidoptera: Sphingidae): molecular evidence from sequence data and ISSR-PCR fingerprints. Org Divers Evol. 2005; 5(3): 173-198.
Luque C, Legal L, Staudter H, Gers C, Wink M. ISSR (inter simple sequence repeats) as genetic markers in Noctuids (Lepidoptera). Hereditas. 2002; 136(3): 251-253.
Radjabi R, Sarafrazi A, Tarang A, Kamali K, Tirgari S. Intraspecific biodiversity of iranian local races of silkworm Bombyx mori by ISSR (inter-simple sequence repeat) molecular marker. World J Zool. 2012; 7(1): 17-22.
Hosseininaveh F, Nozari J, Kaydan MB, Hosseininaveh V. Molecular and morphological identification of pistachio armored scale insects (Hemiptera: Diaspididae), with description of a new species. Zootaxa. 2016; 4200(4): 523-543.
Saha D, Ranjan SK, Mallick CB, Vidyarthi AS, Ramani R. Genetic diversity in lac resin-secreting insects belonging to Kerria spp., as revealed through ISSR markers. Biochem Syst Ecol. 2011; 39(2): 112-120.
Downie D, Gullan P. Phylogenetic analysis of mealybugs (Hemiptera: Coccoidea: Pseudococcidae) based on DNA sequences from three nuclear genes, and a review of the higher classification. Syst Entomol. 2004; 29(2): 238-260.
Hardy NB, Gullan PJ, Hodgson CJ. A subfamily"level classification of mealybugs (Hemiptera: Pseudococcidae) based on integrated molecular and morphological data. Syst Entomol. 2008; 33(1): 51-71.
Hodgson CJ, Henderson RC. Coccidae (Insecta: Hemiptera: Coccoidea). Fauna N Z. 2000; 41: 1-264.
Chen H, He R, Wang Z et al. Genetic diversity and variability in populations of the white wax insect Ericerus pela, assessed by AFLP analysis. Genet Mol Res. 2015; 14(4): 17820-17827.
Chen S-Y, Dai T-X, Chang Y-T et al. Genetic diversity among'Ocimum'species based on ISSR, RAPD and SRAP markers. Aust J Crop Sci. 2013; 7(10): 1463.
Rohlf F. NTSYS-pc Numerical taxonomy and multivariate analysis system. version 2.02 e. EXETER Software Setauket. New York. 1998.
Yeh F, Yang R, Boyle T, Ye Z, Mao J. POPGENE, the user-friendly shareware for population genetic analysis. Alberta, Canada: Molecular Biology and Biotechnology Centre, University of Alberta. 1997.
García Morales M, Denno BD, Miller DR, Miller GL, Ben-Dov Y, Hardy NB. ScaleNet: a literature-based model of scale insect biology and systematics. Database. 2016.
Hess J, Kadereit J, Vargas P. The colonization history of Olea europaea L. in Macaronesia based on internal transcribed spacer 1 (ITS"1) sequences, randomly amplified polymorphic DNAs (RAPD), and intersimple sequence repeats (ISSR). Mol Ecol. 2000; 9(7): 857-868.
Liu J-N, Gui F-R, Li Z-Y. Genetic diversity of the planthopper, Sogatella furcifera in the Greater Mekong Subregion detected by inter-simple sequence repeats (ISSR) markers. J Insect Sci. 2010; 10(1): 1-14.
Dušinskí½ R, Kúdela M, Stloukalová V, Jedlićka L. Use of inter-simple sequence repeat (ISSR) markers for discrimination between and within species of blackflies (Diptera: Simuliidae). Biologia. 2006; 61(3): 299-304.
Ceksteryte V, Paplauskiene V, Tamasauskiene D, Pasakinskiene I, Mazeikiene I. Genetic characterization of Lithuanian honeybee lines based on ISSR polymorphism. Apidologie. 2012; 43(6): 652-662.
Amouroux P, Crochard D, Germain J-F et al. Genetic diversity of armored scales (Hemiptera: Diaspididae) and soft scales (Hemiptera: Coccidae) in Chile. Sci Rep. 2017; 7: 1-12.
de león JH, Jones WA. Detection of DNA polymorphisms in Homalodisca coagulata (Homoptera: Cicadellidae) by polymerase chain reaction-based DNA fingerprinting methods. Ann Entomol Soc Am. 2004; 97(3): 574-585.
Meena RL, Ramasubramanian T, Venkatesan S, Mohankumar S. Molecular characterization of Tospovirus transmitting thrips populations from India. Am J Biochem Biotechnol. 2005; 1(3): 1-3.
Phillips C, Cane R, Mee J, Chapman H, Hoelmer K, Coutinot D. Intraspecific variation in the ability of Microctonus aethiopoides (Hymenoptera: Braconidae) to parasitise Sitona lepidus (Coleoptera: Curculionidae). N Z J Agric Res. 2002; 45(4): 295-303.
Rahimi A, Mirmoayedi A, Kahrizi D, Zarei L, Jamali S. Genetic diversity of Iranian honey bee (Apis mellifera meda Skorikow, 1829) populations based on ISSR markers. Cell Mol Biol. 2016; 62(4): 53-58.